FastQCFastQC Report
Wed 8 May 2024
EGAF00007963463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468421
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16400.3501123988890336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12010.25639328723520083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6620.14132585857593916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6110.13043821690317045No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.11677529401969595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)