FastQCFastQC Report
Wed 8 May 2024
EGAF00007963465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451358
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22820.505585366826333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15080.3341028629159115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10820.23972101967839277No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6220.13780635327168234No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5590.12384847504641548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)