FastQCFastQC Report
Wed 8 May 2024
EGAF00007963467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442688
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25770.5821255602139656No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14580.32935159751337284No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14190.32054178111898224No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14040.31715339019806277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12670.2862060864536649No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11720.26474627728784156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11590.26180967182304465No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10340.23357308081538242No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10330.23334718808732108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10190.2301846898944629No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9480.21414630620211075No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7830.17687400607199652No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7780.17574454243169005No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7500.16941954604597367No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7220.16309454966025733No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7090.16015794419546045No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6310.1425383114066792No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6080.13734277866126934No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.13576152956484025No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5990.13530974410871766No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5960.13463206592453375No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5900.13327670955616597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.12356332224953014No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5270.1190454676883042No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5120.1156570767673847No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4940.11159100766228132No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4730.10684726037299408No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4710.10639547491687147No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4570.1032329767240133No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4480.10119994217146161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)