FastQCFastQC Report
Wed 8 May 2024
EGAF00007963469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426022
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24260.5694541596443377No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22390.5255597128786776No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14090.33073409354446487No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13700.32157963673237533No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12590.29552464426719743No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12390.29083005103022846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11380.2671223551835351No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11140.2614888432991723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9880.23191290590626776No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9440.221584800784936No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9340.2192375041664515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8970.2105525066780589No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7490.17581251672448842No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7450.17487359807709463No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7260.17041373450197408No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6900.1619634666754299No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6830.16032035904249076No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6330.1485838759500683No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6260.14694076831712918No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6120.14365455305125088No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5760.1352042852247067No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5490.12886658435479859No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5400.12675401739816253No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5350.12558036908892029No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5270.12370253179413271No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5170.12135523517564821No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4950.11619118261498233No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4670.10961875208322575No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4490.10539361816995366No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4370.10257686222777226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)