FastQCFastQC Report
Wed 8 May 2024
EGAF00007963471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445240
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25550.5738478124157758No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14490.3254424580001797No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14280.3207259006378582No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13520.3036564549456473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12880.2892821848890486No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11830.26569939807744136No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11500.2582876650795077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10270.23066211481448207No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10200.22908992902704162No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9960.2236995777558171No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9640.21651244272751774No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8730.1960740274907915No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7610.17091905489174378No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7310.16418111580271316No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7070.15879076453148863No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6840.1536250112298985No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6720.15092983559428622No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6690.15025604168538317No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6270.14082292696074028No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6070.13633096756805319No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5930.13318659599317223No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5750.12914383253975384No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5730.12869463660048513No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5310.11926152187584224No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4860.10915461324229629No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4860.10915461324229629No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4850.10893001527266194No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4820.10825622136375887No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4790.10758242745485581No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4620.10376426197107178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)