FastQCFastQC Report
Wed 8 May 2024
EGAF00007963472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428694
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13180.3074454039478043No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13080.3051127377570015No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12870.3002141387563157No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12820.2990478056609143No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11860.2766542102292078No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11040.2575263474646251No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG10730.25029508227313657No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10300.24026461765268464No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9300.21693795574465702No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7310.17051789854768204No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7290.17005136530952147No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7220.16841849897595956No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7150.1667856326423976No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG6740.15722170126010626No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6610.15418923521206268No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6480.1511567691640191No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6230.14532510368701218No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5920.1380938384955236No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5740.13389503935207864No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5680.13249543963759697No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5100.11896597573094095No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5020.11709984277829874No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG4920.11476717658749597No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4910.1145339099684157No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4650.10846897787232851No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4510.10520324520520465No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4490.1047367119670441No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4310.10053791282359911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)