FastQCFastQC Report
Wed 8 May 2024
EGAF00007963473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428694
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25540.5957629451310259No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21230.4952250323074267No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14180.3307720658558319No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13350.311410936472169No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13100.305579270995162No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11820.2757211437528867No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG11200.2612586133699095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10820.252394481844859No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9850.22976761979407223No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9510.22183655474534283No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9440.2202036884117809No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.21623815588741618No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7490.174716697691127No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7440.17355036459572562No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7240.16888503221412007No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7210.16818523235687927No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6890.1607207005463104No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6400.1492906362113769No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.14672470340149382No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6170.14392550397253054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6100.14229263763896857No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5690.13272870625667726No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5450.12713030739875064No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5200.12129864192174371No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG5000.1166333095401382No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4950.11546697644473682No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4910.1145339099684157No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4820.11243451039669322No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4600.10730264477692712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)