FastQCFastQC Report
Wed 8 May 2024
EGAF00007963474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423143
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5990.14155970912906513No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5780.13659684787412293No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5330.12596214518496113No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4390.10374743290093419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)