FastQCFastQC Report
Wed 8 May 2024
EGAF00007963476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405444
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5840.14403962076143684No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5540.13664032517437674No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5000.12332159311766855No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4210.10383678140507689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)