FastQCFastQC Report
Wed 8 May 2024
EGAF00007963477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405444
Total Bases12.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21010.5181973342804432No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12650.31200363058770136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5670.13984668659543611No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4960.12233502037272719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)