FastQCFastQC Report
Wed 8 May 2024
EGAF00007963478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424231
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6270.14779683710054192No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5880.13860373240050822No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5500.1296463483338087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)