FastQCFastQC Report
Wed 8 May 2024
EGAF00007963479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424231
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13400.31586564866782485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6480.1527469704005601No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5440.12823202453380353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4930.11621027223375945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4450.10489568183371795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)