FastQCFastQC Report
Wed 8 May 2024
EGAF00007963483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469896
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8850.18833954747433473No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8610.18323203432248839No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7270.1547150858913462No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.15045882493147422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6630.14109505081975587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.13002877232408874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5660.1204521851643768No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5510.11725998944447283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.11428060677256245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)