FastQCFastQC Report
Wed 8 May 2024
EGAF00007963485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451163
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22580.5004843038990342No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8260.18308238929167506No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7840.173773115259895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7300.1618040486476063No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7290.16158239926589726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6500.1440720981108823No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.12057726364972304No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5140.11392778219845155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4690.10395356002154432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)