FastQCFastQC Report
Wed 8 May 2024
EGAF00007963487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472802
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8660.18316335379291968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8400.17766422307858257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7500.15862877060587732No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7210.1524951248091167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6850.14488094382003458No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5590.11823131035824722No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5500.11632776511097669No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5400.11421271483623165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5300.11209766456148663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)