FastQCFastQC Report
Wed 8 May 2024
EGAF00007963489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452090
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22650.5010064367714393No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8080.17872547501603664No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8000.176955915857462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7130.157711960007963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.15218208763741733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6490.14355548673936605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5580.12342675131057974No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5550.12276316662611426No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5210.11524254020217213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)