FastQCFastQC Report
Wed 8 May 2024
EGAF00007963490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536789
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7920.1475440070493248No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6090.11345239935989747No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5660.10544180301757301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)