FastQCFastQC Report
Wed 8 May 2024
EGAF00007963491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536789
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9800.18256707942972006No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7820.14568107766738886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7140.1330131578702246No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6450.12015894513486677No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6060.11289352054531668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)