FastQCFastQC Report
Wed 8 May 2024
EGAF00007963495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537823
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9040.16808503912997397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8270.15376806123947842No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.13721986601539912No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6770.12587784456968185No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6770.12587784456968185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)