FastQCFastQC Report
Wed 8 May 2024
EGAF00007963497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518368
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26320.5077473918143095No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8530.16455491079696277No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7530.1452635965183036No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7320.1412124205197852No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6270.12095654052719303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)