FastQCFastQC Report
Wed 8 May 2024
EGAF00007963506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501281
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15740.3139955434177637No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13280.2649212717018997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12780.2549468262311957No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11210.22362706745318495No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11210.22362706745318495No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11130.22203115617787228No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10900.21744291126134843No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10550.21046079943185558No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10140.20228175414587823No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9390.1873200859398222No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8790.1753507513749773No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8540.17036352863962528No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7710.15380594915825654No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7180.14323303695931025No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6680.1332585914886062No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5700.11370867836602624No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5280.10533014417063484No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5180.10333525507649402No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5080.10134036598235321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)