FastQCFastQC Report
Wed 8 May 2024
EGAF00007963507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501281
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28790.5743285702031395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25940.5174742310201265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19850.39598548518695104No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17510.34930508038405605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13060.26053251569478997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12900.25734069314416463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12010.23958618020631142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11360.22661940109439616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11250.22442502309084128No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10590.21125875506951192No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10480.209064377065957No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8750.17455279573732096No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7510.14981617096997493No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7120.14203610350282575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6900.13764734749571597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6310.12587750184028518No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.11949385673903458No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5700.11370867836602624No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5600.11171378927188544No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5530.11031736690598686No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5050.10074189925411095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)