FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007963508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467736
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14510.31021772965946603No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12620.26981032035165137No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.25527220483349583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11220.2398789060495664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10470.22384421981630664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10320.22063728256965465No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10050.21486479552568116No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9780.20909230848170762No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9670.20674055450082954No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9000.19241623479911746No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8300.17745052764807498No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8020.17146424478765798No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7820.16718832845878873No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6750.14431217609933808No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6180.13212581456206066No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5180.11074623291771427No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4930.10540133750662768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)