FastQCFastQC Report
Wed 8 May 2024
EGAF00007963509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467736
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61651.3180512083739544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27260.5828073956248825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18590.39744642276839925No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16280.3480595891699591No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11830.2529204508526177No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11270.24094788513178375No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10890.23282364410693213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.22833393196161939No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10440.22320283236697624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9860.21080267501325536No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9700.2073819419501599No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8380.1791608941796227No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7220.1543605794721809No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6560.14025005558691228No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6430.13747070997314725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5770.12336018608787865No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5550.11865667812612243No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5180.11074623291771427No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5120.10946345801905348No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4780.10219440025997571No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4760.10176680862708878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)