FastQCFastQC Report
Wed 8 May 2024
EGAF00007963511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505900
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28470.562759438624234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27210.5378533306977663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21030.41569480134413916No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17890.3536271990511959No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12650.2500494168808065No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12650.2500494168808065No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12600.2490610792646768No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12100.23917770310338013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11130.22000395335046455No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.20913223957303817No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10250.20260921130658233No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9590.1895631547736707No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7650.1512156552678395No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7460.14745997232654676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7270.143704289385254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.12927456018976083No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6150.1215655267839494No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6080.12018185412136786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.11365882585491202No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.10851947025103777No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5290.10456611978651909No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5070.10021743427554852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)