FastQCFastQC Report
Wed 8 May 2024
EGAF00007963513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473686
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63441.3392838293722003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26890.5676756332253856No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18810.3970984998501117No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16020.3381987223603822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11770.2484768390874968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.2440435225022483No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11010.232432455255169No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11000.23222134494158578No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10040.21195475483759282No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10010.21132142389684305No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9650.20372145260784572No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8170.17247712619752326No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7280.15368830828861313No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6790.1433439029230334No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6740.1422883513551171No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5440.11484401058929332No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.1139995693349603No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5320.1123106868262942No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5280.11146624557196118No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4950.1044996052237136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4860.10259961240146427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)