FastQCFastQC Report
Wed 8 May 2024
EGAF00007963514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521957
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19210.3680379801401265No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17710.33929998064974703No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15120.2896790348630251No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8030.1538440906051648No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6970.13353590429862996No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6730.12893782438016924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)