FastQCFastQC Report
Wed 8 May 2024
EGAF00007963516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485003
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17750.3659771176673134No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16690.34412158275309634No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14280.2944311684669992No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7350.15154545435801428No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6130.12639097077750033No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5610.1156693876120354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)