FastQCFastQC Report
Wed 8 May 2024
EGAF00007963517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485003
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64741.334837104100387No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35560.7331913410844881No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17740.36577093337566985No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7570.1560815087741725No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6330.13051465661037148No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5860.12082399490312432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5130.10577254161314466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)