FastQCFastQC Report
Wed 8 May 2024
EGAF00007963518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525352
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18960.3609008816945591No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17240.3281609282918881No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14730.28038343815194383No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7930.15094641307161674No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6750.1284852822488541No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6430.12239412812742693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)