FastQCFastQC Report
Wed 8 May 2024
EGAF00007963519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525352
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38330.7296060546071967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30570.5818955671625882No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19170.36489820158674563No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8220.1564665214941601No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6960.13248260214104068No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6820.1298177222129163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)