FastQCFastQC Report
Wed 8 May 2024
EGAF00007963520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490640
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17560.35789988586336213No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16640.33914886678623835No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13500.275150823414316No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7790.1587722158812979No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6860.1398173813794228No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5760.11739768465677482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)