FastQCFastQC Report
Wed 8 May 2024
EGAF00007963521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490640
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68261.3912440893526823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36140.7365889450513615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17130.3491358225990543No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7940.1618294472525681No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6920.14104027392793086No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6040.12310451654981248No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5240.10679928256970488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)