FastQCFastQC Report
Wed 8 May 2024
EGAF00007963523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511110
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27670.5413707421103089No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25330.49558803388703015No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24450.4783706051534895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21630.4231965721664612No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18240.3568703410224805No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18050.35315294163682964No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG16150.31597894778032126No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA14240.27860930132456807No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13560.26530492457592303No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13390.2619788303887617No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11730.22950049891412808No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10920.21365263837530082No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10590.20719610260022306No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG10230.20015260902741094No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9920.19408737845082272No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9620.18821780047347927No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8470.16571775156032947No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8150.1594568683844965No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6830.1336307252841854No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC6720.13147854669249281No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6520.12756549470759718No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6390.12502201091741505No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA6380.12482635831817025No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6140.12013069593629551No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6070.11876112774158204No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5760.11269589716499384No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5330.10428283539746824No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5250.10271761460351No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5240.10252196200426522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)