FastQCFastQC Report
Wed 8 May 2024
EGAF00007963524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474575
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19500.41089395775167253No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16420.3459937839119212No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16070.338618764157404No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14910.3141758415424327No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14910.3141758415424327No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12400.26128641416003795No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12030.2534899647052626No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10920.23010061634093662No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10520.22167202233577413No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10010.2109255649791919No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9670.20376126007480375No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9320.1963862403202866No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC8770.1847969235631881No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8260.1740504662066059No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7730.1628825791497656No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7730.1628825791497656No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7660.16140757519886212No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7570.15951114154770057No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC6010.12663962492756678No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6000.12642891007743773No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5950.12537533582679242No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5910.12453247642627616No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5830.12284675762524364No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5810.1224253279249855No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5180.10915029236685456No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5120.10788600326608018No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5050.10641099931517674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)