FastQCFastQC Report
Wed 8 May 2024
EGAF00007963525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474575
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64731.363957224885424No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22780.48000842859400517No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22150.46673339303587424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19320.4071010904493494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16630.35041879576463153No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16000.33714376020650055No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15120.318600853395143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13310.28046146552178264No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12930.2724543012168783No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11670.24590423010061635No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10630.2239898856871938No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9950.2096612758784175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9790.20628983827635253No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG8950.18858979086551125No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8820.18585049781383345No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8390.17678975925828372No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8250.17383975135647683No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7550.15908971184744244No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6300.1327503555813096No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC6230.13127535163040616No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6100.12853605857872835No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5970.12579676552705052No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5850.12326818732550175No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA5830.12284675762524364No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5760.1213717536743402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.11294315966917769No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5280.11125744086814518No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5210.10978243691724175No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4800.10114312806195017No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4770.10051098351156297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)