FastQCFastQC Report
Wed 8 May 2024
EGAF00007963526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512563
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21690.4231674935568896No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18620.36327241724431925No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17220.33595870166203956No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15870.3096204759219842No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC15470.30181655718419004No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13060.2547979467889801No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12160.23723912962894314No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11340.2212410962164651No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11030.21519305919467463No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10980.21421756935245034No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10770.2101205120151084No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9950.19412247860263032No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9570.18670875580172583No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9210.17968522893771105No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8570.16719895895724038No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8500.1658332731781264No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG8400.16388229349367783No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7950.1551028849136594No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6570.12817936526826945No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6510.12700877745760034No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6430.1254479937100415No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT6310.12310681808870325No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC6230.1215460343411444No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6150.11998525059358557No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6030.11764407497224731No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT5380.10496270702333177No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5210.10164604155976924No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5200.1014509435913244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)