FastQCFastQC Report
Wed 8 May 2024
EGAF00007963527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512563
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29150.5687105780167511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25360.49476844797615127No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24390.47584394503700034No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21820.4257037671466727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18330.35761457615941844No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17080.33322733010381167No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15810.3084498881113151No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14550.2838675440872634No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13980.2727469598859067No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12940.25245677116764187No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11680.22787442714359016No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11380.2220214880902445No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10090.1968538501608583No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9980.1947077725079649No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG9640.18807444158083983No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9440.18417248221194274No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8710.16993033051546835No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8500.1658332731781264No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7040.13734896978517763No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6660.12993524698427314No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6620.12915485511049374No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC6600.12876465917360402No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA6450.1258381896469312No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6220.12135093637269956No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6190.12076564246736499No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.11979015262514071No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC5510.10749898061311487No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5500.10730388264467003No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5460.1065234907708906No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5430.10593819686555604No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5360.10457251108644204No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG5220.1018411395282141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)