FastQCFastQC Report
Wed 8 May 2024
EGAF00007963528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482236
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19930.41328312278635354No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16910.350658183959721No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15780.3272256737365108No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15740.32639620434807853No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14200.2944616328934381No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12200.25298816347182707No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11360.23556930631475045No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11160.23142195937258936No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10330.21421046956262077No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10120.20985575527335165No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9990.20715997976094694No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9860.2044642042485422No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9100.18870428586833002No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8990.18642324505014143No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG8360.17335910218233397No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7650.15863602053766207No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7430.15407393890128485No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7230.14992659195912375No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6330.1312635307193988No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6220.1289824899012102No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC6060.12566461234748133No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5980.12400567357061687No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5930.12296883683507659No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5490.11384467356232218No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5410.11218573478545774No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT4980.10326893885981138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)