FastQCFastQC Report
Wed 8 May 2024
EGAF00007963529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482236
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67751.4049137766570725No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23720.49187534734030636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22800.4727975514063653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20010.414942061563218No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16810.3485845104886404No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16100.3338614288439685No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14090.2921805920752495No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13160.27289542879420037No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12410.2573428777610962No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12240.2538176328602593No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10510.2179430818105658No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10410.21586940833948523No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10360.21483257160394495No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9450.19596214301711196No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG9270.19222953076916696No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8920.18497167362038505No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8100.16796755115752454No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7300.15137816338888013No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6460.13395930623180352No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC6410.13292246949626324No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6180.12815302051277797No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6060.12566461234748133No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5850.12130989805821217No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5800.12027306132267189No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11674781642183495No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA5130.1063794490664322No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5080.10534261233089194No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC5000.1036836735540275No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4920.10202473477716305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)