FastQCFastQC Report
Wed 8 May 2024
EGAF00007963531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487963
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26300.5389752911593707No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13610.2789145898357047No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.24161667995319316No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5930.12152560747433719No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5860.12009107247885598No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5550.11373813178458202No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5530.11332826464301596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)