FastQCFastQC Report
Wed 8 May 2024
EGAF00007963532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455380
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10450.2294786771487549No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6370.13988317449163337No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5960.13087970486187359No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA5210.11440994334402038No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4900.10760244191664105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)