FastQCFastQC Report
Wed 8 May 2024
EGAF00007963533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455380
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61491.3503008476437262No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13220.2903069963546928No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10260.22530633756423207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5580.12253502569282797No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5500.12077825113092362No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5280.11594712108568667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5050.11089639422021168No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4910.10782203873687908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)