FastQCFastQC Report
Wed 8 May 2024
EGAF00007963535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493498
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26590.5388066415669365No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14430.29240240082026675No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11010.2231012081102659No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5990.12137840477570323No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5790.11732570344763302No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5770.11692043331482599No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5680.11509671771719439No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5390.10922030079149259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)