FastQCFastQC Report
Wed 8 May 2024
EGAF00007963537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462524
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62921.360361840682862No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12740.27544516608867864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10210.22074530186541672No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5790.12518269322240577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5060.10939972844652385No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4680.10118393856318807No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4670.10096773356625818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)