FastQCFastQC Report
Wed 8 May 2024
EGAF00007963538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491618
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24990.508321501653723No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19980.40641310936540165No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13170.2678909234405575No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12130.24673628711723328No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11420.23229417962727159No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10010.20361337461199547No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9690.19710425574328036No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9250.18815421729879703No Hit
GGCTTCGGTGCGCGGACCCAGGTTGTGACGAAAGCGCATGTTGC9240.1879508073341497No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8390.1706609603391251No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8070.16415184147040995No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7970.16211774182393646No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7860.15988023221281564No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7810.1588631823895789No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6860.13953923574808083No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6680.13587785638442856No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6660.13547103645513386No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6220.12652099801065056No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6040.12285961864699829No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5960.1212323389298195No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5760.11716413963687253No Hit
GTAACCATCTTCGGTGTCACGCGGATCACCGAAGTTAACCTGAA5710.11614708981363579No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5120.10414590189944226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)