FastQCFastQC Report
Wed 8 May 2024
EGAF00007963539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491618
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27280.5549023835579657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26250.5339511571992889No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26040.5296795479416946No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15020.3055217669003169No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14150.28782509997599764No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12390.25202494619806437No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11780.23961693835457612No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10750.21866571199589926No Hit
TCTGACGAACGCGGCCCGATCGTTAAAGCAC9790.19913835538975383No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9590.19507015609680686No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9530.1938496963089228No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9180.1867303475462656No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8830.17961099878360842No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8730.17757689913713492No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8440.17167801016236184No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8130.16537230125829405No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7790.15845636246028422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7700.15662567277845807No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7440.151337013697627No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7230.1470654044400327No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7010.14259038521779105No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6730.1368949062076653No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6520.132623296950071No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6490.13201306705612895No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.1250971282581191No Hit
CTGAAGGCGGTAAGCTCCAACCTGGACCTGT5970.12143574889446684No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5360.10902774105097861No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4990.10150157235902674No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4930.10028111257114264No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.10007770260649529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)