FastQCFastQC Report
Wed 8 May 2024
EGAF00007963540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458664
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22900.49927615858231733No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17270.37652835190902273No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12410.2705684335374043No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11160.24331536811260532No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10130.22085884220257096No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9500.20712329722847225No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8880.19360577677777197No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8480.18488479584183629No Hit
GGCTTCGGTGCGCGGACCCAGGTTGTGACGAAAGCGCATGTTGC7880.17180332443793278No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7650.16678876039976975No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7400.16133814731480997No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7320.15959395112762284No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6980.1521811173320775No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6980.1521811173320775No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6500.1417159402089547No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6280.1369194006941901No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5940.12950656689864476No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5790.1262361990476689No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5600.12209373310309943No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5360.11686114454153804No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5350.11664312001813963No Hit
GTAACCATCTTCGGTGTCACGCGGATCACCGAAGTTAACCTGAA5160.11250065407357018No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4670.10181745242704901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)