FastQCFastQC Report
Wed 8 May 2024
EGAF00007963541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458664
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62301.3582927807719813No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23730.5173721940243838No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22190.4837964174210316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13750.29978371967278883No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13000.2834318804179094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10720.23372228908307607No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10380.22630945528753074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10260.22369316100675005No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9230.20123663509671566No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8610.18771911464601537No Hit
TCTGACGAACGCGGCCCGATCGTTAAAGCAC8480.18488479584183629No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8330.18161442799086042No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8050.17550974133570546No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7800.17005912825074565No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7440.16221024540840354No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7250.1580677794638341No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7110.15501543613625662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.15348926447246786No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6600.14389618544293864No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6490.1414979156855563No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.139099645928174No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6310.13757347426438526No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6050.13190483665602706No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5950.12972459142204315No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5810.12667224809446564No Hit
CTGAAGGCGGTAAGCTCCAACCTGGACCTGT5350.11664312001813963No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4780.1042157221844313No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4730.10312559956743934No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4700.10247152599724416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)