FastQCFastQC Report
Wed 8 May 2024
EGAF00007963542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497611
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23460.4714526005253099No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18990.38162339658890176No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14110.28355482495362844No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11620.23351573819710578No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10960.22025236580381063No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10640.21382163979494023No Hit
GGCTTCGGTGCGCGGACCCAGGTTGTGACGAAAGCGCATGTTGC9410.1891035366983447No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9300.1868929746327955No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9240.18568721350613232No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8350.16780175679396153No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8070.16217487153619994No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8050.16177295116064555No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7510.1509211010206768No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7350.1477057380162416No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7130.1432846138851432No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6940.1394663703173764No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6860.13785868881515884No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6820.13705484806405002No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6390.12841355998963044No Hit
GTAACCATCTTCGGTGTCACGCGGATCACCGAAGTTAACCTGAA6100.12258571454409169No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6050.12158091360520568No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5870.11796363022521608No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5860.11776267003743889No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5720.11494922740855809No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5040.10128393463970853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)